Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs17729286 chr4:1101148 C/A 1.13E-13 496 31.53 33.5 32.1 KM Plot
THCA rs17756204 chr11:88083639 G/A 0 498 31.27 35.33 5.23 KM Plot
THCA rs17787717 chr10:104695699 T/G 9.69E-14 501 31.32 35.6 32.1 KM Plot
THCA rs17794752 chr14:24701705 G/C 7.53E-12 493 31.47 33.87 12.87 KM Plot
THCA rs17849496 chr19:9922223 G/A 5.07E-6 496 31.45 33.22 32.9 KM Plot
THCA rs17881215 chr10:104629236 G/C 5.75E-9 496 31.2 35.35 29.58 KM Plot
THCA rs17882560 chr10:104650630 G/A 2.91E-9 501 31.03 35.33 29.58 KM Plot
THCA rs1809134 chr2:181339313 A/G 0.000125 503 31.43 31.33 32.38 KM Plot
THCA rs181909285 chr10:29336036 T/G 5.44E-7 503 31.77 30.63 27.1 KM Plot
THCA rs181951924 chr14:24663105 G/A 5.4E-11 494 31.7 30.58 14.98 KM Plot
THCA rs1820114 chr19:9805692 G/A 4.32E-6 502 31.42 33.62 32.9 KM Plot
THCA rs1821938 chr2:181338276 T/G 0.000143 502 32.87 31.28 31.47 KM Plot
THCA rs1844727 chr16:82261718 G/A 8.19E-5 500 27.1 30.4 32.82 KM Plot
THCA rs185445002 chr7:44012092 C/T 3.71E-9 494 31.32 32.9 33.7 KM Plot
THCA rs1859620 chr7:43987949 C/G 2.47E-8 500 31.03 33.5 32.37 KM Plot